Gluten-Free Pecan Chocolate Chip Cookies

Melted butter, rich chocolate chips, and toasted pecans combine to create a chewy gluten-free pecan chocolate chip cookie that is so rich and satisfying. It’s the perfect balance of sweet and savory, with just a touch of flaky sea salt making it perfect for any occasion. If you’re looking to take a classic chocolate chip cookie to the next level, this is the recipe for you!
Two gluten free pecan chocolate chip cookies layered on top of each other on a pink table with additional gluten free cookies and toasted pecans in the background.
A close up of gluten-free chocolate chip pecan cookies layered on top of each other on a piece of parchment paper with toasted pecans and dark chocolate chips scattered around.

Why this recipe works

I love a good, classic chocolate chip cookie. However, there’s something to be said for versions that take a traditional chocolate chip cookie and amp it up. That’s where these gluten-free pecan chocolate chip cookies come in! 

Each bite is a blend of warm, gooey chocolate and nutty pecans, with a perfectly golden edge and a soft center, achieving that sought-after bakery-quality texture and taste.

Whether you’re looking for a fun baking project for a cozy night at home, a delicious gluten-free cookie for your next party or potluck, or a special cookie recipe to place on the table at the holidays, these chocolate chip cookies with pecans are just what you need. 

You’ll love this recipe because:

  • They’re easy to make. This recipe is straightforward to follow. With clear, step-by-step instructions accompanied by process photos, even beginners can master the perfect texture and taste every time.
  • They’re rich and flavorful. The combination of toasted pecans and high-quality chocolate chunks or chips, flavored with a hint of cinnamon and vanilla, creates a complex flavor profile that goes beyond the average chocolate chip cookie! If you’re looking to step up your gluten-free chocolate chip cookie game, this is the recipe for you!
  • They’re gluten-free! Just take one bite and you would never guess that these cookies are gluten-free. Using Bob’s Red Mill 1-to-1 Gluten-Free Flour blend makes it so easy to bake these gluten-free cookies. Everyone will enjoy them, whether they have celiac disease or not!

Ingredients

Ingredients in small bowls to make gluten free pecan chocolate chip cookies, including brown sugar, sugar, chocolate chips, flaky sea salt, melted butter, cinnamon, gluten-free flour blend, vanilla, salt, pecans, baking soda, and eggs with text overlays over each ingredient.

Ingredient Notes

  • Gluten-free flour blend – This recipe was tested with Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour in the blue bag, which already contains xanthan gum. I cannot verify that other brands of gluten-free flour will work, as I have not tested them and different gluten-free flour blends behave differently in recipes.
  • Baking soda – Freshness matters. An old baking soda can cause your cookies not to rise properly. To test its effectiveness, pour a few tablespoons of vinegar into a small bowl and add a teaspoon of baking soda; it should fizz vigorously if it’s still fresh. 
  • Salt – I used regular table salt for this recipe. 
  • Ground cinnamon – Adds a subtle warmth and depth to the cookies. Feel free to adjust the amount based on your taste preference or omit it if you’re not a fan of cinnamon. You can’t really taste it in the cookies, it just rounds out the flavor nicely. 
  • Unsalted butter – Melted butter contributes to the chewiness of the cookies. Make sure it’s cooled slightly before use to avoid cooking the eggs. When using melted butter, it’s very important to chill your dough before baking, otherwise the cookies will spread too much in the oven. 
  • Brown sugar – Using brown sugar adds moisture and a slight chewiness due to its molasses content.
  • Granulated sugar – I prefer combining brown sugar with white sugar in my chocolate chip cookies to achieve the perfect balance of flavor, browning, and sweetness.
  • Eggs – I used large eggs that are 50g each. Ensure the eggs are at room temperature for better incorporation into the batter. 
  • Pure vanilla extract – Pure vanilla adds a rich flavor, as opposed to imitation vanilla, which can sometimes leave a chemical aftertaste.
  • Chocolate chunks or chips – Choose high-quality chocolate for the best taste. Dark, milk, or a mix can be used based on personal preference. You can also chop your own chocolate if you prefer to have irregular sized chocolate pieces in your cookies. 
  • Toasted pecans – Toasting the pecans before adding them to the dough enhances their flavor and crunch. Roughly chop to get pieces that are not too small to add texture to the cookies. I like to do some larger and some smaller for variety in each bite.
  • Flaky sea salt, such as Maldon salt – Sprinkling flaky sea salt on top of the cookies before they cool adds a gourmet touch and a nice contrast to the sweetness of the cookie. You can omit it if you don’t have any on hand, but I highly recommend it. 

Toasting pecans before adding them to recipes can significantly enhance their flavor and crunch. There are multiple ways to toast pecans. You can toast them in the oven at 350°F (175°C) for 7-10 minutes or in a dry skillet for 3-5 minutes, until they smell nutty and are lightly toasted.

Step-by-Step instructions

For the ingredient list with measurements, full instructions, printable recipe, and additional notes, please scroll down to the recipe card.

A glass mixing bowl with gluten-free flour, cinnamon, salt and baking soda in it before mixing together.
In a mixing bowl, combine the gluten-free flour, cinnamon, baking soda, and salt. Whisk to combine and set aside.
A glass mixing bowl with melted butter topped with brown sugar and granulated sugar.
In a separate mixing bowl, add the melted butter, granulated sugar, and brown sugar. Mix together with an electric mixer until smooth and combined.
A glass mixing bowl with a mixture of melted butter, brown sugar and granulated sugar topped with pure vanilla extract and two eggs.
Add the eggs and vanilla extract to the butter and sugar mixture.
An electric mixer mixing together a cookie dough mixture of melted butter, brown sugar, sugar, vanilla, and eggs.
Mix with an electric mixer for 1-2 minutes, until the mixture is smooth.
A glass mixing bowl with gluten-free cookie dough topped with gluten-free flour before mixing together.
Gradually add the dry ingredients to the wet ingredients, mixing in between each addition. Mix until no streaks of flour remain.
A close up of gluten free chocolate chip cookie dough topped with a pile of dark chocolate chips and toasted pecans before mixing together.
Add the dark chocolate chips and toasted pecan pieces to the cookie dough. Stir until evenly disbursed. Chill the dough for at least an hour.
A close up of gluten-free pecan chocolate chip cookie dough balls on a baking sheet lined with parchment paper before baking in the oven.
Scoop the dough into balls and place on a baking sheet lined with parchment paper. Top the dough balls with the remaining chocolate chip and pecan pieces.
Six gluten-free pecan chocolate chip cookies on a baking sheet lined with parchment paper.
Bake for 9-11 minutes, until the cookies are set on the edges and lightly golden brown. Do not over bake. Let the cookies cool slightly before removing to a wire rack to finish cooling. Enjoy!

Recipe FAQs

Which gluten-free flour blend should I use for this recipe?

I tested this recipe using Bob’s Red Mill 1-to-1 Gluten Free Baking Flour (in the blue bag), which already contains xanthan gum. This blend is meant to be used as a 1:1 swap with all-purpose flour and it works perfectly in this gluten-free cookie recipe. I cannot guarantee that other gluten-free flour blends will work in this recipe, as I have not tested them myself. 

What’s the best way to measure the gluten-free flour blend?

For the most accurate results, weigh your flour using a kitchen scale. If you don’t have one, use the spoon-and-level method to avoid packing too much flour into the measuring cup.

Are pecans gluten-free?

Yes, pecans are naturally gluten-free. Nuts in their raw, unprocessed form, including pecans, do not contain gluten, making them safe for people with celiac disease or gluten sensitivity. However, when buying pecans, especially if they’re pre-packaged or flavored, it’s important to check the labels for any added ingredients or processing methods that might introduce gluten. 

Why do you recommend toasting the pecans?

Toasting pecans deepens their nutty flavor and adds a crunchy texture to the cookies, enhancing the overall taste and experience.

What kind of chocolate chips work best in this recipe?

This is largely a matter of personal preference. You can use semi-sweet, dark, or milk chocolate chips. Personally, I like dark chocolate chips for this recipe. For a gourmet twist, try chopping a high-quality chocolate bar into chunks.

expert tips

  • Measure ingredients accurately. Use a kitchen scale for precise measurements, especially for the gluten-free flour blend. This precision is crucial in gluten-free baking to avoid dry or dense cookies.
  • Rest the dough. Chilling the cookie dough for at least an hour (or even overnight) allows the flavors to meld together and the flour to hydrate fully, resulting in a cookie with better texture and flavor. This step also helps in controlling the spread of the cookies during baking.
  • Use a cookie scoop. To ensure all of the cookie dough balls are the same size and will bake in the same time frame, use a cookie scoop or ice cream scoop to portion out the dough. You want the dough to be 2-3 tablespoons in size. I use the #24 scoop (red scooper) which holds about 2.7 tablespoons of dough. 

Storage instructions

  • Storage: Once completely cooled, store the cookies in an airtight container. I find these keep well for about 3-4 days at room temperature. 
  • Freezer Option: This is my preferred method for keeping cookies that I don’t plan on eating with in the next day or so. Flash freeze the baked cookies on a sheet pan. Once frozen, place them in a freezer-safe bag or container and label the bag. They’ll stay good in the freezer for up to 3 months. You can also freeze the dough before baking if you prefer using the same method. You may just need to add an additional minute to the baking time to compensate for baking the dough from frozen. 
  • Reheat/Thaw: To thaw frozen cookies, leave them on the counter top for about 30 minutes until soft and chewy once again. I love doing this because you can freeze a big batch of cookies and only take out 1-2 to satisfy a cookie craving.

A stack of four gluten free pecan chocolate chip cookies on a pink table with additional cookies and toasted pecans in the background.

Serving Suggestions

While it’s always a good idea to eat your chocolate chip pecan cookies as is, there are also many fun ways you can serve them to take your cookies to the next level! Here are some of my favorites:

  • Briefly warm the cookies in the microwave for a few seconds before serving to enhance their gooey chocolate and toasted pecan flavors, making them taste freshly baked.
  • Make a cookie sandwich by spreading a layer of buttercream, ganache or cream cheese frosting in between two cookies. I recommend my brown butter cream cheese frosting, nutella ganache, peanut butter frosting paired with this cookie.
  • If you want to make an ice cream sandwich, try my Chocolate Peanut Butter Ice Cream.
  • Melt some chocolate (dark, white, or milk) and dip half of the cookie into it. Sprinkle with some additional flaky sea salt and then allow them to cool on a parchment-lined tray until the chocolate is set. 
  • Bundle them in cellophane with a ribbon as thoughtful homemade gifts for friends or family or as a party favor at your next gathering. 
  • Crumble the cookies and use them as a topping for yogurt, oatmeal, or ice cream sundaes. The crumble adds a delightful texture and flavor boost to simple desserts or breakfast dishes.

Did you make this recipe?

I’d love to know! Please rate it and leave a comment below. You can also share your pictures and tag @adashofmegnut on Instagram.

Two gluten free pecan chocolate chip cookies layered on top of each other on a pink table with additional gluten free cookies and toasted pecans in the background.

Gluten-Free Pecan Chocolate Chip Cookies

Melted butter, rich chocolate chips, and toasted pecans combine to create a chewy gluten-free pecan chocolate chip cookie that is so rich and satisfying. It’s the perfect balance of sweet and savory, with just a touch of flaky sea salt making it perfect for any occasion. If you’re looking to take a classic chocolate chip cookie to the next level, this is the recipe for you!
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Course: Dessert
Cuisine: American
Diet: Gluten Free
Prep Time: 10 minutes
Cook Time: 11 minutes
Chilling Time: 1 hour
Total Time: 1 hour 21 minutes
Servings: 24 cookies
Calories: 261kcal
Author: Megan

Ingredients

  • 2 1/2 cups gluten-free flour blend (360g)
  • 1 teaspoon baking soda (7g)
  • 1 teaspoon salt (7g)
  • 1/2 teaspoon ground cinnamon
  • 3/4 cup unsalted butter (melted and slightly cooled (170g))
  • 1 cup brown sugar (211g)
  • 1/2 cup granulated sugar (100g)
  • 2 eggs (100g)
  • 1 tablespoon pure vanilla extract
  • 2 cups chocolate chunks or chips (divided, 300g total)
  • 1 cup toasted pecans (roughly chopped (100g))
  • 1/2 teaspoon flaky sea salt (such as Maldon salt)

Instructions

  • In a medium mixing bowl, combine gluten-free flour blend, baking soda, salt and rground cinnamon. Whisk to combine. Set aside.
  • In a large mixing bowl, add melted butter, brown sugar, and granulated sugar.
  • Cream with an electric mixer for 2-3 minutes, until light and fluffy, scraping down the sides of the bowl with a spatula as needed.
  • Add the eggs and vanilla extract and mix until smooth.
  • Add half of the flour mixture to the butter mixture and stir until just combined. Repeat with the remaining flour, stirring until no more streaks of flour remain.
  • Stir in 1 ½ cups of the chocolate chunks and 3/4 cups of the toasted pecans, reserving the rest for later.
  • Chill the dough for at least one hour.
  • Preheat the oven to 350°F (175°C). Line a baking sheet with parchment paper.
  • Scoop the dough into 2-3 tablespoon balls. You should get about 24 dough balls in total.
  • Place the cookie dough balls on the prepared baking sheet, leaving at least 3-4 inches in between each one. I can typically get 6-8 cookies on a sheet at a time. Place any remaining dough balls in the refrigerator until ready to bake.
  • Top the cookie dough balls with the remaining chocolate chips and toasted pecans before baking. This will help you get chocolate pockets on top of the cookies as they bake.
  • Bake in the middle rack of the oven at 350°F (175°C) for 10-12 minutes, until the edges of the cookie are lightly browned and the middle is no longer shiny. Let cool on the baking sheet for 4-5 minutes before removing to a cooling rack to cool completely. Sprinkle the cookies with flaky sea salt right after removing them from the oven. Repeat with remaining dough.
  • Once the cookies have cooled, enjoy!

Notes

  • If you have celiac disease or are on a gluten-free diet for any reason, be sure to double check your ingredients to ensure they are gluten-free, as manufacturing practices and ingredient lists can change over time. 
  • I tested this recipe with Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour, in the blue bag, which already contains xanthan gum. You do not need to add xanthan gum to this recipe because of that. I also cannot guarantee that other gluten-free flour blends will work in this recipe, as they are all so different.
  • When measuring gluten-free flour, use a food scale to weigh it for the most accurate results. If you must measure it using a measuring cup, spoon it into the measuring cup and level it off with a knife. Avoid scooping directly with the cup to prevent packing and using too much flour, which can result in dry cookies.
  • To toast the pecans, you can bake them in the oven at 350°F (175°C) for 7-10 minutes or place them in a dry skillet over medium-low heat, stirring frequently, for 3-5 minutes until the pecans smell nutty and are lightly browned. Be sure to keep an eye on them because they can burn very quickly. You don’t want to use burned nuts because they will make the rest of the cookie taste burned, too. 

Nutrition

Calories: 261kcal | Carbohydrates: 30g | Protein: 3g | Fat: 15g | Saturated Fat: 7g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 5g | Trans Fat: 0.2g | Cholesterol: 30mg | Sodium: 201mg | Potassium: 117mg | Fiber: 3g | Sugar: 19g | Vitamin A: 207IU | Vitamin C: 0.05mg | Calcium: 32mg | Iron: 2mg
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about megan

I’m Megan

A gluten-free food blogger from Chicago and lover of all things food, showing you gluten-free can be easy and delicious, too. Let’s make gluten-free stress free together! Read more…

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