Gluten-Free Chocolate Muffins

Two gluten-free chocolate muffins with chocolate chips on top, stacked in white paper liners, with more muffins and a bowl of chocolate chips in the background.

Gluten-free muffins are one of my favorite things to stock in my freezer because they freeze so well and are easy to thaw for a quick treat. I typically tend to grab for non-chocolate muffins varieties, like my gluten-free blueberry muffins or gluten-free banana muffins, but these gluten-free chocolate muffins are quickly becoming a new favorite! 

Why You’ll Love this Recipe

  • They’re so soft. The combination of oil, eggs, and milk creates a tender crumb that stays moist for days.
  • They’re easy to make ahead. Perfect for brunch entertaining or grab-and-go breakfasts throughout the week. 
  • They’re gluten-free. Made with a gluten-free flour blend, these muffins are so soft and fluffy, you’d never know they’re gluten-free.

Ingredients

Ingredient Notes

  • Gluten-Free Flour Blend -I tested this recipe with Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour (in the blue bag), which already contains xanthan gum. I cannot verify that other brands work as I have not tested them.
  • Milk – Whole milk adds richness and moisture to the muffins. You can use 2% milk or a non-dairy alternative like almond or oat milk if you prefer. 
  • Eggs – Use large eggs that are 50g each, weighed outside of the shell. If using a different size, beat the eggs completely and weigh 100g for the recipe. You’ll need about 2.5 medium eggs or 1.5-1.75 jumbo eggs.
  • Vegetable Oil – Use a neutral-flavored oil like vegetable, canola, or grapeseed oil to keep the muffins moist without affecting the flavor. 
  • Chocolate Chips – I love dark chocolate chips. Guittard extra dark chocolate chips are my favorite. You can use semi-sweet or milk chocolate chips, or chop up a chocolate bar for irregular-sized bites. Be sure to save some chocolate chips for the top of each muffin. It’s so pretty!

Why I Include Metric Measurements

For the most accurate and consistent results, use a food scale to measure your ingredients by weight instead of relying on measuring cups. Measuring by grams ensures precision, especially with gluten-free flour, where even a slight difference in measurement can affect the texture of your muffins. Gluten-free ingredients can be expensive, so make sure you’re measuring correctly every time!

Step-by-Step instructions

These chocolate muffins are made gluten-free and are very simple to throw together in the morning for a quick breakfast. The below photos with matching steps are not meant to be the full recipe, but are there to help you see the muffins made at various stages so you can make them perfectly every time.

For the ingredient list with measurements, full instructions, printable recipe, and additional notes, please scroll down to the recipe card.

A mixing bowl with dry ingredients for gluten-free chocolate muffins, including gluten-free flour, sugar, cocoa powder, and baking soda, surrounded by other ingredients like eggs, milk, chocolate chips, and vanilla extract.
Whisk together the gluten0free flour, granulated sugar, cocoa powder, baking powder, baking soda and salt in a mixing bowl.
Close-up of a mixing bowl containing wet ingredients for gluten-free chocolate muffins, including eggs, milk, vanilla extract, and oil.
In a separate bowl, mix together the eggs, oil, milk and vanilla.
Wet ingredients being poured into a mixing bowl of dry ingredients to make gluten-free chocolate muffins, with chocolate chips visible in a small bowl beside the mixture.
Pour the wet ingredients into the dry ingredients.
A mixing bowl filled with a smooth, thick chocolate batter, ready for gluten-free chocolate muffins, with a small bowl of chocolate chips beside it.
Mix until no more streaks of flour remain.
A mixing bowl with chocolate chips added to the chocolate batter for gluten-free chocolate muffins, ready to be folded in.
Mix most of the chocolate chips into the chocolate muffin batter, leaving some for topping.
A muffin tin filled with chocolate batter, ready to bake gluten-free chocolate muffins, each topped with chocolate chips.
Portion the chocolate muffin batter into a muffin tin lined with parchment liners. Top with the remaining chocolate chips.
Close-up of a muffin tin filled with freshly baked gluten-free chocolate muffins, highlighting the texture and chocolate chips on top of each muffin.
Bake until the muffins are cooked through. When you push on the top of the muffin it should spring back and not stay indented once it’s done.
Close-up of multiple gluten-free chocolate muffins on a cooling rack, topped with chocolate chips, with one muffin partially unwrapped to show the moist interior.
Serve and enjoy!

Recipe FAQs

Can I make these muffins dairy-free?

Yes! You can substitute the milk with a non-dairy alternative like almond milk, soy milk, or oat milk. For the chocolate chips, make sure to use a dairy-free variety.

Can I use a different type of chocolate chips?

Absolutely! You can use semi-sweet, milk chocolate, or even white chocolate chips depending on your preference. Just keep in mind that the flavor profile will change slightly with different types of chocolate.

Expert Tips

  • Use a cookie scoop for even portioning. This ensures all muffins are the same size for consistent baking, and makes the process quicker and less messy.
  • Fill liners almost to the top. Gluten-free muffins don’t rise as much as traditional ones, so filling them nearly to the top creates that classic, beautifully domed muffin top.
  • Add extra chocolate chips on top before baking. This gives you a bakery-worthy look and an extra burst of chocolate in every bite.

Storage Instructions

  • Storage: Store cooled muffins in an airtight container at room temperature for up to 3 days. If they start to taste stale, microwave for about 10 seconds to melt the chocolate and soften the muffin.
  • Freezer Option: Place cooled muffins in a single layer on a baking sheet and freeze until solid. Transfer to a freezer-safe bag or airtight container for up to 3 months. Thaw at room temperature for 30 minutes to an hour, or microwave for 15-30 seconds.

Serving Suggestions

These chocolate muffins are delicious served warm with a pat of butter and your favorite cup of coffee. For a special brunch spread, pair them with my gluten-free cinnamon coffee cake or better yet, my gluten-free chocolate chip coffee cake for variety on the table.

For an extra indulgent treat, split a warm muffin and spread it with chocolate cream cheese frosting. If you’re serving these for brunch alongside something savory, my gluten-free breakfast casserole is the perfect complement.

Close-up of a gluten-free chocolate muffin split in half on an unwrapped liner, showing the rich, moist texture with chocolate chips visible inside.

Did you make this recipe?

Several gluten-free chocolate muffins with chocolate chips on top arranged on a light-colored surface, with a small bowl of chocolate chips in the background.
5 from 1 vote

Gluten-Free Chocolate Muffins

These gluten-free chocolate muffins are loaded with chocolate chips and have a moist, tender crumb. Simple to make, these bakery-style muffins rise beautifully with a classic domed top. They're perfect for breakfast or a snack, and freeze easily for later, too!
Print Recipe Pin Recipe Rate this Recipe
Prep Time 10 minutes
Cook Time 17 minutes
Total Time 27 minutes
Servings 12 muffins

Ingredients

  • 1 ¾ cups (245 g) gluten-free flour blend - I used Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour, which already contains xanthan gum
  • ½ cup (40 g) unsweetened cocoa powder
  • 1 cup (200 g) granulated sugar
  • 1 tablespoon (12 g) baking powder
  • ½ teaspoon (2 g) baking soda
  • ½ teaspoon salt
  • ¾ cup (180 g) whole milk - 6 fl oz
  • 2 (100 g) large eggs
  • ½ cup (120 g) vegetable oil
  • ½ tablespoon (6.5 g) vanilla extract
  • 1 ½ cups (210 g) dark chocolate chips - divided (210g)

**Use the toggle button above to turn the instruction photos on and off!

Instructions

  • Preheat the oven to 400°F (200°C). Line a 12-cup muffin tin with paper liners or grease with nonstick cooking spray. Set aside.
  • In a large bowl, whisk together 1 ¾ cups (245 g) gluten-free flour blend, ½ cup (40 g) unsweetened cocoa powder, 1 cup (200 g) granulated sugar, 1 tablespoon (12 g) baking powder, ½ teaspoon (2 g) baking soda, and ½ teaspoon salt. Set aside.
  • In a medium mixing bowl, whisk together ¾ cup (180 g) whole milk, 2 (100 g) large eggs, ½ cup (120 g) vegetable oil, and ½ tablespoon (6.5 g) vanilla extract until smooth.
  • Pour the wet ingredients into the dry ingredients. Mix until just combined, being careful not to overmix.
  • Fold in 1 cups (140.07 g) dark chocolate chips, reserving the remaining ½ cup for topping.
  • Portion out the muffin batter into the prepared muffin tin using a cookie scoop or measuring cup. The muffin cups will be almost filled to the top.
  • Sprinkle the tops with the remaining ½ cup 0.5 cups (69.93 g) dark chocolate chips.
  • Bake at 400°F for 15-17 minutes, or until the muffins are cooked through. The tops should spring back when lightly pressed, or a toothpick inserted into the center should come out clean with just a few moist crumbs.
  • Let the muffins cool for 5 minutes before removing them from the muffin tin. Transfer to a wire rack to finish cooling.
  • Serve and enjoy!

Notes

 
  • Gluten-Free Flour: This recipe uses Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour, which includes xanthan gum. I haven’t tested other gluten-free flour brands, so results may vary.
  • Gluten-Free Note: If you have celiac disease or follow a gluten-free diet, double-check that all ingredients are gluten-free.
  • Dairy-Free Option: To make dairy-free, use non-dairy milk like unsweetened almond milk and dairy-free chocolate chips.
  • Measuring Tips: For most accurate results, use a kitchen scale to measure ingredients by weight. This ensures accuracy with gluten-free flour, which can vary in density and affect texture.
  • muffins.

Nutrition

Calories: 355kcal | Carbohydrates: 45g | Protein: 6g | Fat: 18g | Saturated Fat: 9g | Polyunsaturated Fat: 6g | Monounsaturated Fat: 3g | Trans Fat: 0.1g | Cholesterol: 29mg | Sodium: 185mg | Potassium: 332mg | Fiber: 4g | Sugar: 26g | Vitamin A: 67IU | Vitamin C: 0.1mg | Calcium: 151mg | Iron: 2mg

One Comment

5 from 1 vote

Leave a Reply

Your email address will not be published. Required fields are marked *

Recipe Rating




This site uses Akismet to reduce spam. Learn how your comment data is processed.