Gluten-Free Chocolate Chip Muffins

These delicious gluten-free chocolate chip muffins are the perfect breakfast treat. Made with a gluten-free flour blend, these muffins are light and fluffy on the inside with a slightly crunchy exterior.  They're loaded with mini semi-sweet chocolate chips for a delicious treat that you won't be able to tell is gluten-free. They're on the table in about 20 minutes!
A single gluten-free mini chocolate chip muffin with a stack of dessert plates behind it.
A single gluten-free mini chocolate chip muffin with a stack of dessert plates behind it.

Why this recipe works

Bakery-style gluten-free chocolate chip muffins are a great way to treat yourself… or your family and friends. You won’t believe how easy they are to make or how quickly they come together! No special equipment is needed— all you need are some mixing bowls, a muffin pan, and an oven. 

Would you believe me if I told you these gluten-free chocolate chip muffins can be on the table in just about 20 minutes? It’s true! This is one of the many reasons I love making gluten-free muffins—they’re so quick and easy. They make a great grab-and-go breakfast or snack, so I always have some in my kitchen. 

This gluten-free chocolate chip muffin recipe is one of my favorites because they’re bakery style muffins. The muffins themselves are BIG and have the best crunchy muffin tops from a combination of mini chocolate chips and turbinado sugar. The inside is light, fluffy and sooooo moist. You can eat them warm with a little melted butter or at room temperature—they’re scrumptious either way. 

You’ll love this recipe because:

  • It’s quick. You can have these muffins on the table in under 20 minutes! They take just a few minutes to mix together the batter and then 15-17 minutes in the oven. They’re perfect for last minute guests or for an impromptu brunch on the weekends. 
  • It’s delicious. These bakery-style gluten-free muffins are so light and fluffy. You will honestly think you got them from the local gluten-free bakery. 
  • It’s gluten-free. Using a gluten-free flour blend makes these chocolate chip muffins gluten-free! It’s an easy swap for all-purpose flour and you won’t be able to tell these muffins are gluten-free. Be sure to follow all of my tips to make sure your muffins turn out delicious! 

Ingredients

Ingredients in small bowls on a herringbone table to make gluten-free chocolate chip muffins with text overlays over each ingredient.

Ingredient Notes

  • Gluten-free flour blend – I tested this recipe with both Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour and King Arthur Flour Measure for Measure Gluten Free Baking Flour. Both of these blends already contain xanthan gum and are meant to be a 1-for-1 swap with all-purpose flour.
  • Xanthan gum – If your gluten-free flour blend does not contain xanthan gum, you will need to add it. Xanthan gum is a corn-based ingredient that either provides elasticity or is used as a thickening agent in many foods. It’s used in gluten-free baking to keep baked goods from crumbling and falling apart. 
  • Milk – I used whole milk in this recipe, but 2% would also work here. I’ve also tested this recipe with almond milk successfully. The muffins don’t get as much rise as they do with the whole milk, but if you are dairy-free it’s a good option. 
  • Eggs – I always use large eggs for baking. If you are using medium or jumbo or extra large eggs, you’ll want to adjust the number of eggs you’re using. Large eggs weigh about 50 grams eacho, so we need 100 grams total for this recipe. Crack your eggs into a bowl and whisk them with a fork to combine the yolk and egg whites. Then measure out 100 grams of eggs for this recipe. You may have extra, so use that for another recipe or make some scrambled eggs on gluten-free toast for a quick snack or breakfast.
  • Vegetable oil – Instead of butter, I like to use oil for my muffins. It gives them a lot of moisture. You can use any neutral oil that you’d like. Canola oil, grapeseed oil, avocado oil, or even a very light olive oil works here. 
  • Mini chocolate chips – I like to use mini chocolate chips in my muffin recipes. The miniature size keeps the chocolate chips from sinking into the bottom of the muffin cup when baking. I also love the ratio of chocolate to muffin you get in each bite with mini chocolate chips. I used mini semi-sweet chocolate chips, but you can use milk chocolate, dark chocolate, or even bittersweet chocolate.
  • Turbinado sugar – Turbinado sugar is a type of raw brown sugar that has large sugar crystals. It doesn’t really melt into batters like other sugars do, so it typically isn’t used for baking. However, it is often used as a topping on baked goods when you want a crunchy exterior. Bakeries use turbinado sugar a lot for muffins and cookies. All you need is a little bit of sugar to sprinkle over the muffin cups before baking and you get a deliciously crunchy topping when they come out of the oven.

For best results, use a food scale and follow the metric measurements stated in the recipe card. Baking with a food scale is far more accurate for dry ingredients, especially gluten-free flour that can vary easily depending on the way you scoop it.

Step-by-Step instructions

This gluten-free chocolate chip muffin recipe is so easy to make with some simple pantry staples. The photos and matching step-by-step instructions below are to help you see the recipe at various stages and do not have all of the complete steps and ingredient amounts.

For the ingredient list with measurements, full instructions, printable recipe, and additional notes, please scroll down to the recipe card.

A glass mixing bowl with gluten-free flour blend, cinnamon, salt, baking powder, and baking soda.
Add the dry ingredients to a large mixing bowl. Whisk until combined.
A glass mixing bowl with milk, vegetable oil, eggs, and vanilla in it.
Add the milk, eggs, oil, and vanilla to another mixing bowl.
Wet ingredients added to a gluten-free flour mixture in a glass bowl.
Add the wet ingredients into the dry ingredients.
A glass mixing bowl with gluten-free muffin batter in it with a pink spatula.
Stir until smooth and no more streaks of flour remain.
A glass mixing bowl with gluten-free muffin batter topped with a pile of mini chocolate chips and pink spatula.
Add 1 cup of the chocolate chips to the batter. Stir until combined.
A closeup of muffin liners filled with gluten-free muffin batter topped with mini chocolate chips and turbinado sugar before baking in the oven.
Portion out the gluten-free muffin batter into 12 lined muffin cups. Sprinkle the tops with the remaining mini chocolate chips and turbinado sugar.
A 12-cup muffin tray filled with baked gluten-free chocolate chip muffins.
Bake for 15-17 minutes, until the muffins are golden and cooked through.
An overhead view of gluten-free chocolate chip muffins on a cooling rack.
Let the muffins sit at room temperature in the pan for 5 minutes before removing to a wire rack to finish cooling. Enjoy!

Recipe FAQs

What gluten-free flour blend is best?

I’ve tested this recipe with King Arthur Baking Gluten Free Measure for Measure flour and Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour. Both contain xanthan gum and are meant to be substituted as a 1-for-1 swap with all-purpose flour. I cannot guarantee that other brands of flour will work in this recipe as I have not tested them myself. 

Do I need to add xanthan gum to this recipe? 

The two gluten-free flour blends that I recommend already include xanthan gum in them. If you use a blend other than the two I suggest, you may need to add xanthan gum if the blends do not contain it. I’d recommend using ½ teaspoon. Again, I cannot guarantee that the recipe will turn out if you use a flour blend other than the two that I recommend in the recipe. 

Can I use almond flour or coconut flour in this recipe?

No. Almond flour and coconut flour do not work the same way as a gluten-free flour blend does and the ratios are very different. Please do not use these flours in this recipe as you will be wasting your ingredients. Use a recipe that calls specifically for one of these flours. 

Can I use regular size chocolate chips instead of mini chocolate chips? 

I really like to use mini chocolate chips in this recipe, because the chocolate chips stay suspended in the muffin batter. Regular size chocolate chips tend to size to the bottom of the muffin cup. 

hints & tips

  • Use a cookie scoop to ensure that all of your muffins are the same size and will bake in the same amount of time. This also helps keep the muffin tin from getting messy with loose batter. With a cookie scoop you can make sure the muffin batter stays in the cups and not all over your muffin tray.
  • Use paper muffin liners for easy baking. You can certainly grease the muffin cups if you prefer to not use liners, but be sure not to grease them too much. I typically will spray some non-stick spray in the muffin cups and then wipe out any excess with a towel so that the oil does not pool in the bottom of the muffin tin. 
  • If you’re using non-stick cooking spray, always be sure that it is gluten-free. There is a baking spray that adds flour to it and this is not gluten-free. It’s very easy to grab the wrong one at your local grocery store, so always double check those ingredients!

Storage instructions

Storage: You can store leftover chocolate chip muffins in an airtight container at room temperature for 3-4 days. If the muffins start to taste stale after day 2, I’ll typically warm them up briefly in the microwave to make them softer. 

Freezer Option: I love to freeze leftover muffins so I can have quick grab-and-go breakfast and snack options. Place gluten-free muffins on a sheet pan or plate and flash freeze for an hour, or until solid. Once frozen, place in a freezer-safe bag or container for up to 3 months. Defrost them at room temperature for about an hour, or until no longer frozen.

A close up of a gluten-free chocolate chip muffin that has been broken in half to show the fluffy inside on a stack of dessert plates.

Did you make this recipe?

I’d love to know! Please rate it and leave a comment below. You can also share your pictures and tag @adashofmegnut on Instagram.

A single gluten-free mini chocolate chip muffin with a stack of dessert plates behind it.

Gluten-Free Chocolate Chip Muffins

These delicious gluten-free chocolate chip muffins are the perfect breakfast treat. Made with a gluten-free flour blend, these muffins are light and fluffy on the inside with a slightly crunchy exterior.  They're loaded with mini semi-sweet chocolate chips for a delicious treat that you won't be able to tell is gluten-free. They're on the table in about 20 minutes!
5 from 2 votes
Print Pin Rate
Course: Breakfast, Dessert
Cuisine: American
Diet: Gluten Free
Prep Time: 5 minutes
Cook Time: 17 minutes
Total Time: 22 minutes
Servings: 12 muffins
Calories: 348kcal
Author: Megan

Ingredients

  • 2 cups gluten-free flour blend (280g)
  • 1 cup granulated sugar (200g)
  • 1 tablespoon baking powder
  • 1 teaspoon ground cinnamon
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2/3 cup milk (150g)
  • 2 large eggs (100g)
  • 1/2 cup vegetable oil (113g)
  • 1/2 tablespoon vanilla extract
  • 1 1/2 cups mini chocolate chips (divided (225g total))
  • 1/2 tbsp turbinado sugar (or other coarse sugar (6g))

Instructions

  • Preheat the oven to 400F. Line a 12 cup muffin tin with paper liners or grease with nonstick cooking spray. Set aside.
  • In a medium bowl, whisk the gluten-free flour blend, granulated sugar, baking powder, ground cinnamon, baking soda, and salt together. Set aside.
  • In a large mixing bowl, add together the milk, eggs, vegetable oil and vanilla extract. Whisk until smooth.
  • Pour the wet ingredients into the dry ingredients. Mix until combined.
  • Fold in 1 cup of the mini chocolate chips, reserving the rest for later.
  • Portion out the muffin batter into the prepared muffin tin. The muffin cups will be almost filled to the top.
  • Sprinkle the tops with the remaining 1/2 cup of mini chocolate chips and the turbinado sugar.
  • Bake at 400F for 15-17 minutes, until the muffins are browned and cooked through.
  • Let the muffins cool for 5 minutes before removing from the muffin tin. Set on a cooling rack to finish cooling.
  • Serve and enjoy!

Notes

  • This recipe was tested with Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour and King Arthur Measure for Measure Gluten Free Flour. Both of these flours already contain xanthan gum so there is no need to add it to the recipe. If your blend does not contain xanthan gum, you will need to add it to the recipe. I recommend adding ¾ teaspoon of xanthan gum to this recipe. 
  • If your gluten-free flour blend does not contain xanthan gum, you will need to add it. I’d recommend ½ teaspoon of xanthan gum. However, I do recommend using one of the two gluten-free flour blends I recommended above. 
  • While you could use regular-sized chocolate chips, I prefer to use the mini chocolate chips in this recipe. They are light enough that they don’t sink to the bottom of the muffins. Also, I love the added crunch from sprinkling the extra chocolate chips on top. 
  • If you haven’t used turbinado sugar before, it’s a coarse, large crystal sugar that adds some crunch. It’s typically used as a finishing sugar and not something that you would bake with because the granules are too large. If you don’t want to add turbinado sugar to the tops of these muffins, you can omit it. I have done this many times when I’ve been out of it. 
  • For best results, use the metric measurements that have been provided, especially for dry ingredients like the gluten-free flour blend. The way that you measure flour can vastly change how the recipe turns out. A food scale is only about $10 and so much easier than using measuring cups! If you need to use measuring cups, be sure to spoon the flour into the measuring cup and then level it off with a flat surface. If you scoop the measuring cup into the bag of flour, your flour will be too dense and your muffins will not turn out well. 
  • If you have celiac disease or are on a gluten-free diet, always be sure to double check that all of your ingredients are gluten-free as ingredients and manufacturing practices can change from time to time. 

Nutrition

Calories: 348kcal | Carbohydrates: 48g | Protein: 4g | Fat: 16g | Saturated Fat: 5g | Polyunsaturated Fat: 5g | Monounsaturated Fat: 3g | Trans Fat: 0.1g | Cholesterol: 32mg | Sodium: 175mg | Potassium: 133mg | Fiber: 3g | Sugar: 33g | Vitamin A: 112IU | Vitamin C: 0.1mg | Calcium: 106mg | Iron: 1mg
Tried this Recipe? Tag me Today!Mention @ADashofMegnut or tag #adashofmegnut!

This recipe was originally posted on November 14, 2010 and updated on January 30, 2023 with new photos, recipe updates, tips, tricks, and FAQs to help you make these gluten-free chocolate chip muffins perfectly every time!

about megan

I’m Megan

A gluten-free food blogger from Chicago and lover of all things food, showing you gluten-free can be easy and delicious, too. Let’s make gluten-free stress free together! Read more…

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